This is how in the derset and Thomas sees Alpha Trion again goes in The Amazing Train-Prime Adventure.
[We see our heroes racing through a hot desert. Grimlock stops suddenly and sniffs the air]
James: What is he afraid of? He's the biggest thing on Earth. Well, used to be.
Thomas: I think Grimlock can sense that there's danger nearby.
[Optimus transforms into robot mode and looks around]
Optimus Prime: I don't see any danger.
Percy: Neither do I.
Thomas: Well, there has to be something wrong. [transforms into robot mode]
Yuna: Whoa! This desert seems to stretch on for miles!
Skyla: I know right?
[StarSound is standing on a rocky peak nearby. She looks down at Thomas]
Starsmoke: [on COMM] StarSound, have you found the tank engine yet?
StarSound: Yes, Master. His name is Thomas. Or according to Trainbot history, OpThomas Prime.
Starsmoke: [on COMM] What?! But Hunter killed them all eons ago.
StarSound: Maybe so. But, this one still lives.
[on the ground, Megatron transforms into robot mode and stands still for a moment]
Twilight: What's the matter, Megatron?
[Megatron says nothing. James transforms into robot mode and waves a hand in front of his face]
James: Umm. Hello? Earth to Megatron?
Megatron: Oh, sorry. [laughs nervously]
Scootaloo: What's wrong with you?
Megatron: I don't know. It's just that I've got this feeling.
Rainbow: But you just stare at the sky and when we ask you something you do it still.
Stephen: Does anyone have the feeling someone's watching us?
Percy: I do, kind of.
Henry: [as Indiana Jomes] Oh. That can't be good.
[Up on the rocky peak, StarSound quickly hides from our heroes' view. Optimus looks around and sees no one]
Optimus: [laughs] Stephen, there's no one there.
Stephen: You can't be too sure you know.
Fluttershy: You know, somethings people say aren't entirely true.
Stephen: I know that, I've heard every piece of advice and expression ever made. But I still have the feeling we're being watched.
Edward: Whatever it is, we can't see it. Let's keep going and keep your eyes open.
Thomas: Maybe that's the feeling that Megatron and Grimlock have.
[Our heroes move away. On the rocky peak, StarSound peaks out from her hiding place, jumps down and silently follows them]
Applejack: You know, somethin' ain't right.
Stephen: I told you.
Yuna: Whatever! Let's keep going.
[The team continues on. StarSound stays put and sends out a drone]
StarSound: Now, they won't get the feeling that "someone" is watching them.
[The drone follows the group as they continue on their way]
Applejack: Ah' ain't gettin' that feelin' somepony is watchin' us anymore.
Stephen: Neither am I.
[Thomas suddenly stops and puts his hand to his head, grunting. Everyone stops and looks at him]
Percy: What's wrong, Thomas?
Thomas: I think Alpha Trion's trying to contact me agai.... [he suddenly collaspes to the ground, unconscious]
Twilight: [gasp] Thomas!
Bumblebee: Is he okay?
Optimus: I don't know. But he said something about Alpha Trion!
[in the dark space, Thomas wakes up and sees Alpha Trion]
Thomas: What is it, Alpha?
Alpha Trion: Thomas. StarSound's been following you.
Alpha Trion: StarSound. One of Starsmoke's fellow Deceptitrains.
Thomas: Oh, no. That can't be good.
Alpha Trion: It isn't. And one of StarSound's drones is watching you right now.
Thomas: [gasp] But then, that means...
Alpha Trion: Yes. Starsmoke is trying find out more about you and your powers.
Thomas: I won't let him get away with this.
Alpha Trion: I know you won't, Thomas. Starsmoke won't stand a chance against you.
Thomas: I know he won't.
Twilight's voice: [echos] Thomas!
Thomas: Oh, no. That's Twilight! She's waking me up.
Alpha Trion: Indeed. I'll see you again later. Got it?
Thomas: Got it.
Alpha Trion: Goodbye, Thomas. [disappears]
Thomas: Goodbye, Alpha. And thank you. [lays back down and closes his eyes]
[back in reality]
Thomas: [groans] Twilight? Is that you?
Twilight: Yes. It's me, Thom.
Thomas: [gets up groaning]
Ratchet: Are you alright?
Thomas: Yeah, Ratchet. I'm fine.
Optimus: You said something about Alpha Trion.
Thomas: Yes, I did. I was about to tell you that he was trying to contact me again until I fell unconscious. Well, anyways, how long was I out?
Ratchet: About an hour. Although, I still don't quite understand one thing.
Thomas: Well, what is it?
Ratchet: It's just... [sighs] How can Alpha Trion talk to you? I mean, he was killed during Cybertron's destruction.
Optimus: Ratchet, remember that day when I came back to base with the Star Sabre and it started glowing and I stared at it without saying a word?
Thomas: You should remember that cause I remember it.
Ratchet: [sighs] Kind of.
Optimus: Well, that all lead up to me having a vision of my mentor.
Thomas: Anyways, Alpha Trion told me that Starsmoke's fellow Deceptitrain, StarSound, is watching us.
Twilight: What? What are you talking about?
Stephen: I knew it!
Thomas: Starsmoke has many other Deceptitrains working for him. Alpha Trion said each one of them had strengths and weaknesses.
Rarity: What strength and weakness does Starsmoke have?
Thomas: I don't really know. Alpha Trion didn't get enough time to tell me.
Rainbow: Let me guess, because Twilight woke you up?
Twilight: I'm sorry if I didn't give him enough time.
Thomas: That's okay, Twi. [gets up]
Percy: Well, It's good to see that you don't have any injuries.
Twilight: Well, what else did Alpha Trion say?
Thomas: As I told you, he didn't get enough time.
James: [starts to leave] You guys just work out the details. I'm going to look for StarSound. [walks off]
Bumblebee: What's up with him?
Rarity: He's probably just having another one of his tantrums again.
Sweetie Belle: Well, now that you mention it, James has been acting weird lately.
Rarity: What are you talking about, Sweetie Belle?
Sweetie Belle: Well, it's just that he's been acting really weird and I have no idea what's up with him.
Rarity: Well, just don't worry about it, Sweetie! James is just being who he is.
Sweetie Belle: I hope he's alright.
Rarity: I do too.
Sweetie Belle: I know you really like James and I don't like to see you worried about him.
Rarity: Don't worry, sweetheart. I can handle my feelings whether I'm worried or not.
Sweetie Belle: I know, Rarity. You tell me everyday. But I still can't help feel worried for you.
Rarity: I'm glad to have a caring sister like you Sweetie.
Pinkie: Yay! Hugs! Hugs are always good!
Thomas: Yeah, Pinkie. We get it.
Percy: Now let's get going before something else happens.
Bumblebee: I'm gonna go find James.
Applejack: Okay, Buzz Bot.
Apple Bloom: See ya' in a minute.
[Bumblebee transforms into his muscle car form and drives off. Elsewhere, out of the view of the others, James is looking around for StarSound]
James: Alright, StarSound! Wherever you are, come on out! [aiming with his plasma cannon]
[StarSound's drone comes out of nowhere and attacks James from behind]
[he hits the ground]
[StarSound comes out and lets the drone rest on her arm]
StarSound: Good job.
[James gets up as StarSound inserts the drone into her chest]
StarSound: James, is it?
James: Yeah, that's me.
StarSound: You're Thomas' friend. Am I correct?
StarSound: The number 5 red engine. I do believe you know a certain OpThomas Prime.
James: How do you know about my friend?
StarSound: I learned about him when I was following you.
James: Anyways, I'm here to battle you.
StarSound: Well then, if you want to start now, [brings out a laser pistol] Bring it on.
James: Okay. [cracks his knuckles]
[The two bots stare at each other for a moment and then James fires his plasma cannon at StarSound]
StarSound: [the blast hit her but cause her no damage] You expect that to injure me?
James: Well, yes.
StarSound: Well, you're wrong. [closes her visor over her face and headbutts James into a rocky wall]
[All of a sudden, Bumblebee shows up]
StarSound: You again?! [fires her laser pistol at him]
Bumblebee: [jumps to avoid the shot and he fires his plasma cannon at her]
James: Bumblebee, be careful. She can't be damaged and she's very strong!
Bumblebee: I'll be careful, James!
James: Oh, good.
[StarSound suddenly fires a shot in the wrong direction, right towards where James is. Bumblebee notices]
Bumblebee: James, look out!
[the shot hits a rocky cliff and it breaks into boulders that fall on James]
StarSound: [evil laughter] Now that he's out of the way, we can resume fighting.
Bumblebee: You won't get away with this! [throws a boulder at her]
StarSound: [dodges it] Well, I already have.
Bumblebee: [throws another boulder]
StarSound: [dodges it] I can't believe you're that bad-a thrower.
[under the boulders, James starts to slowly lift up the biggest ones]
[Meanwhile, outside, Bumblebee and StarSound continue fighting]
StarSound: [fires her laser pistol]
Bumblebee: [fires his arm cannons]
[Bumblebee manages to fight StarSound off. He then sees the biggest boulders starting to move and James comes out, injured and severly damaged]
Bumblebee: James, you're hurt!
James: I'm fine, Bee. [slowly get up but suddenly feels a slight pain]
Bumblebee: No, you're not. I'm going to call Ratchet.
James: No! There's no need for that! Right now, we've got to get after StarSound. She's getting away.
Bumblebee: I know. But you need to be repaired. [activates his COMM] Ratchet, James has been severly damaged. We need you down here now.
Ratchet: [on COMM] Okay, 'Bee. I'm on my way.
[Back at Starsmoke's lair, StarSound chuffs up to Starsmoke]
StarSound: Lord Starsmoke.
Starsmoke: What is it?
StarSound: I found out some infomation on that tank engine like you said.
Starsmoke: Congratulations, StarSound. You serve me well.
StarSound: I know I do;
Starsmoke: Anyways, what did you find out?
StarSound: I found that his name is Thomas. And that he comes from an island called Sodor.
Starsmoke: Yes. And what else?
StarSound: Well, he helped his friends out of a predicament and become a Train-Prime.
Starsmoke: What?! But Hunter killed the Train-Primes years ago.
StarSound: Maybe so, but there is one that still lives. And that Train-Prime is Thomas.
Starsmoke: Well, we must come up with a better plan.
StarSound: Yeah. Indeed, we must.
Starsmoke: Please go to your quaters. I need to think of a better plan.
StarSound: Yes, Master. I will not disturb you.
Starsmoke: Thank you, StarSound.
StarSound: You're very welcome, Lord Starsmoke! [leaves]
Starsmoke: [in his head] I hope I can come up with a good plan.
[Back in the desert, Ratchet is tending to the injured James]
Ratchet: James, the next time you decide to take a Deceptitrain head on, call for back up.
James: I don't need back up, Ratchet. I can handle them alone.
Bumblebee: Well, you should've called for back up in the first place.
James: I told you I don't need it!
Bumblebee: Oh, come on.
Ratchet: There you go. Now, you stay off that leg for a while.
James: Okay, Ratchet. [slowly gets up with Bumblebee surpporting him]
Bumblebee: Here, James. I'll carry you. [puts James on his back]
Rarity: Thanks for taking care of my handsome engine, Ratchet.
Ratchet: You're very welcome, Rarity.
Rarity: Are you okay, James?
James: Yeah, Rarity. I'm fine. Just a little damaged, that's all. [grunts in pain]
Rarity: You worry me sometimes, James. I just don't like you getting hurt. It makes me think you're going to die.
James: Well, I'm not.
Arcee: We're just glad that you're still with us.
James: I know that, Arcee.
Rarity: Well, we just wanted to know one thing.
Bulkhead: You've been acting weird lately. What is it that's making you act weird?
James: I don't really know. I think it's probably just a glitch.
Gordon: You call your behaviour, a glitch?!
Thomas: Gordon, there's no need to get bad-tempered. A glitch is what he thinks it is.
Gordon: Yes. But I think otherwise.
Edward: Well, whatever, what James thinks is causing his weird behaviour is what he thinks is causing his weird behaviour.
Thomas: Yeah. So, it doesn't really matter.
Optimus: Wait, Thomas. Remember that day that you saw what you thought was the ghost of one of the Train-Primes who told you about your past on Cybertron during its Golden Ages?
Thomas: Yeah. He told me that I was sent to Earth to be protected from the Deceptitrains as a sparkling.
Optimus: Well, that wasn't really his ghost.
Thomas: It wasn't?
Thomas: Then, you're saying that Train-Prime was one from the past that came back to life?
Optimus: Yeah. That's what I'm saying.
Thomas: Why didn't you tell me this earlier?
Optimus: It was just too early. So, I didn't have enough time.
Thomas: Oh. Optimus?
Thomas: Do you think one day, I might discover my past?
Optimus: I believe so, Thomas.
Twilight: Well, I don't understand what the Train-Prime meant by "Destined for greatness".
Thomas: Yeah. Neither do I.
Optimus: I know. But that is for you to figure out.
Thomas: I know. But how will I do it?
Optimus: I don't know.
Thomas: Well, I have to try, if I ever want to discover my past.
Smokescreen: We know that, kid.
Arcee: Even you have greatest of antics.
Thomas: Thanks, Arcee.
Shining Armor: Well, anyways, what was that Train-Prime's name? You know, the one who told Thomas about his past?
Optimus: I don't know. But one day, Thomas will figure it out.
Cadance: Do you think that Train-Prime could've been trying to tell Thomas the same things Alpha Trion told him?
Optimus: I don't know. But Thomas figure it out in the future.
Twilight: Anyways, we still don't know what Starsmoke's strength and weakness is.
Shining Armor: We'll find out soon.
[they all set off again as we fade out of this scene and into the next]