Here is how Bowser and his Company begin their reign in Princess Yuna of Skylands.
Meanwhile, at the Friendship Rainbow Kingdom.
Bowser: So, you give the Lightcore Amulet to Yuna, Daughter of the Princess of the Night?
Twilight Sparkle: (angry at Bowser)
Kaos: Soon, every Skylander will bow to my will. Isn't that, Twilight?
Twilight Sparkle: You will not prevail, Kaos.
Twilight, Sunset and Trixie escapes.
Drako: They got away!
Bowser: it doesn't matter, Drako. They'll be back. And when they do, We'll be ready for them.
Aku: And so we will, Bowser
Then, Bowser notice that Yuna has the Lightcore Amulet.
Bowser: Where's Yuna? Where's her castle?!
Pythor P. Chumsworth: Castle? Her castle? Uh, no, no. She doesn't have a castle.
Dr, Eggman: You mean to tell us that she's gone with her friends?
The Grand Duke of Owls: At this rate, We'll be outwitted for good!
Feathers McGraw: (points to the light)
Thaddeus E. Klang: Hmmm. Not for much longer.
Meanwhile, Yuna was speaking to the army.
Princess Yuna: All right, everyone. Listen up, Bowser and his company are taking over Equestria with Kaos taking over Skylands.
Oh: Yuna's counting on us to buy her enough time.
Prince Edmond: Oh is right!
Mickey Mouse: (has the magic paintbrush)
Oswald the Lucky Rabbit: (has the remote control)
SpongeBob SquarePants: Who're Yuna's friends going after first?
Golden Queen: Pythor. He's the one who betrayed us all!
Kaos (clone): But he could be still be on our side.
Wolfgang: Then let's keep out hopes up.
Soon, The foals searched for Pythor.
Prince Edmond: Pythor!
Pythor P. Chumsworth: Hello, friends.
Pound Cake: Pythor, Why did you joined Bowser? I thought you were friends with everyone in Ponyville!
Pumpkin Cake: And what about Viper?
Pythor P. Chumsworth: Viper? My girlfriend? (thinking about Viper)
Judy: Yes! She loved you! Not as a prisoner and Friendship is Magic, Not Imprisonment. Bowser's just using you!
Pythor P. Chumsworth: What have I done?!
Bowser: You are no longer a use to us, Pythor!
Bowser Jr.: And just like Discord!
Bowser and his company trapped them in the forcefield.
Pythor P. Chumsworth: You were all right about everything. I felt very guilty!
Princess Twila: I know.